The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1206
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1244132
End posion on genome 1244205
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
gaatgtatct
tRNA gene sequence 
GCACCGATAGGGTAGTCAGGATATCCTATGGGCCTCCGGAGCCTATGACTCGGGTTCAAA
TCCCGACCGGTGCGtcg
Downstream region at tRNA end position 
ttttcttttt
Secondary structure (Cloverleaf model)
>At1206	Arg	CCG
                   t      Gtcg ttttcttttt
                     G - C
                     C - G
                     A - T
                     C - G
                     C - G
                     G - C
                     A   C          T A
                    T     A G C C C     A
    C T G A        A      | | | | |     A
  A         T G G G       T C G G G     C
  G           | | +                 T T
  G         T C C T
    A T A          A     TGAC
                    T - A
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCACCGATAGGGTAGTCAGGATATCCTATGGGCCTCCGGAGCCTATGACTCGGGTTCAAA
TCCCGACCGGTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK