The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1207
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1244384
End posion on genome 1244455
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atcaaaccgt
tRNA gene sequence 
GCCAGGTTGGCGGAGCGGCCACGCGACTGCCTGCAGAGCAGTTCTACGCCTGTTCAAATC
AGGCACCTGGCTtgt
Downstream region at tRNA end position 
catttcaaaa
Secondary structure (Cloverleaf model)
>At1207	Cys	GCA
                   t      Ttgt catttcaaaa
                     G - C
                     C - G
                     C - G
                     A - T
                     G - C
                     G - C
                     T - A          T A
                    T     C G G A C     A
        G A        G      | | | | |     A
      C     G G C G       G C C T G     C
      G       | | |                 T T
      G     A C G C
        C C        G     TCTAC
                    A - T
                    C - G
                    T - A
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAGGTTGGCGGAGCGGCCACGCGACTGCCTGCAGAGCAGTTCTACGCCTGTTCAAATC
AGGCACCTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK