The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1208
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1283727
End posion on genome 1283811
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
gagtatatct
tRNA gene sequence 
GCGAAGGTAGCCAAGCCAGGTTAAAGGCGCCAGCTTCAGGGGCTGGTCTCGTAGGAGTTC
TGGGGTTCGAATCCCTTCCTTCGCActt
Downstream region at tRNA end position 
gttttttaca
Secondary structure (Cloverleaf model)
>At1208	Leu	CAG
                   t      Actt gttttttaca
                     G - C
                     C - G
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A        + | | |     G
  A         A C C G       T G G G G     C
  G           | | |                 T T
  G         A G G C
    T T A A        G     TCTCGTAGGAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAAGGTAGCCAAGCCAGGTTAAAGGCGCCAGCTTCAGGGGCTGGTCTCGTAGGAGTTC
TGGGGTTCGAATCCCTTCCTTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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