The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1209
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1297751
End posion on genome 1297823
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
acacaactgt
tRNA gene sequence 
GCCGCCATAACTCAGTTGGTAGAGTGGCTGGCTGTTAACCAGCATGTCACAGGTTCGAGT
CCTGTTGGCGGCGttt
Downstream region at tRNA end position 
cttttgtttt
Secondary structure (Cloverleaf model)
>At1209	Asn	GTT
                   t      Gttt cttttgtttt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     A - T          T G
                    T     T G T C C     A
      T G A        A      | | | | |     G
    T       C T C A       A C A G G     C
    G       | | | |                 T T
    G       G A G T
      T A          G     ATGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCATAACTCAGTTGGTAGAGTGGCTGGCTGTTAACCAGCATGTCACAGGTTCGAGT
CCTGTTGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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