The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1211
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1554023
End posion on genome 1554095
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
atgatttcag
tRNA gene sequence 
GCTAAGGTAGGGTAGCTGGACATCCTTTAGGATTGTGGATCCTTAGACCCGGGTTCGACC
CCCGGCCTTGGCCctt
Downstream region at tRNA end position 
cgtttttgaa
Secondary structure (Cloverleaf model)
>At1211	His	GTG
                   g      Cctt cgtttttgaa
                     G - C
                     C - G
                     T + G
                     A - T
                     A - T
                     G - C
                     G - C          C C
                    T     G G C C C     A
      C G A        A      | | | | |     G
    T       T G G G       C C G G G     C
    G         | | +                 T T
    G       T C C T
      A C A        T     AGAC
                    T   T
                    A - T
                    G - C
                    G - C
                    A - T
                  T       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTAAGGTAGGGTAGCTGGACATCCTTTAGGATTGTGGATCCTTAGACCCGGGTTCGACC
CCCGGCCTTGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK