The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1212
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1674125
End posion on genome 1674198
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
aggtaaaagg
tRNA gene sequence 
GGGCCCGTAGCATAGCTAGGTGGTGCGCCCGGCTGATAACCGGGAGGTCATGAGTTCGAA
TCTCATCGGGCCCActg
Downstream region at tRNA end position 
tttttctgat
Secondary structure (Cloverleaf model)
>At1212	Ile	GAT
                   g      Actg tttttctgat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C T C     A
      C G A        A      | | | | |     G
    T       T A C G       A T G A G     C
    A       + | | |                 T T
    G       G T G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCATAGCTAGGTGGTGCGCCCGGCTGATAACCGGGAGGTCATGAGTTCGAA
TCTCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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