The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1213
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1722192
End posion on genome 1722273
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
aagtattttc
tRNA gene sequence 
GCGAGGGTATCCAAGTGGCCAACGGAGGCTGACTCAAGATCTGCTCTCAAGGAGTTCGCG
GGTTCGAATCCCTCCCCTCGCAtct
Downstream region at tRNA end position 
gatttactgt
Secondary structure (Cloverleaf model)
>At1213	Leu	CAA
                   c      Atct gatttactgt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        A      |   | | |     G
    G       A C C T       G C G G G     C
    G         | | |                 T T
    C       C G G A
      C A A        G     TCTCAAGGAGTTC
                    G - C
                    C - G
                    T   T
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTATCCAAGTGGCCAACGGAGGCTGACTCAAGATCTGCTCTCAAGGAGTTCGCG
GGTTCGAATCCCTCCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK