The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1214
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 76148
End posion on genome 76065
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tagtttttag
tRNA gene sequence 
GCTGAGGTAGTCTAGCGGTAGGGCGCGGGCCTGGAAAGCCCGTGAGGCGAAAGTCTCTCG
GGAGTTCAAATCTCCCCCTCAGCGttc
Downstream region at tRNA end position 
ttattttaga
Secondary structure (Cloverleaf model)
>At1214	Ser	GGA
                   g      Gttc ttattttaga
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
        G A        A      | | | | |     A
      C     T C T G       G G G A G     C
      G     + | + |                 T T
      G     G G G C
        T A        G     TGAGGCGAAAGTCTCTC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGAGGTAGTCTAGCGGTAGGGCGCGGGCCTGGAAAGCCCGTGAGGCGAAAGTCTCTCG
GGAGTTCAAATCTCCCCCTCAGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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