The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1215
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 344812
End posion on genome 344726
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
aaggtccgga
tRNA gene sequence 
GCCGAGATAGTCTAGTCCGGAAAGGCGGTGGCCTTGAAAGCCTCTGGTAGTAATACCTCG
GGAGTTCAAATCTCCCTCTCGGCGCCA
Downstream region at tRNA end position 
ttttgaaccg
Secondary structure (Cloverleaf model)
>At1215	Ser	TGA
                   a      GCCA ttttgaaccg
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C T C     A
      T G A        A      | | | | |     A
    C       T C T G       G G G A G     C
    C       | | + |                 T T
    G       A G G C
      G A A        G     TGGTAGTAATACCTC
                    G - C
                    T   T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGATAGTCTAGTCCGGAAAGGCGGTGGCCTTGAAAGCCTCTGGTAGTAATACCTCG
GGAGTTCAAATCTCCCTCTCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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