The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1216
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 359486
End posion on genome 359415
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cacataatgt
tRNA gene sequence 
GCCGTCGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGCCGAGGGTTCAAGTC
CCTCCGACGGCTtat
Downstream region at tRNA end position 
cattctcttc
Secondary structure (Cloverleaf model)
>At1216	Thr	CGT
                   t      Ttat cattctcttc
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A
                     C - G
                     G - C          T G
                    T     C T C C C     A
        G A        G      | | | | |     A
      C     T T C G       G A G G G     C
      G       | | |                 T T
      G     T A G C
        T A        G     AGGCC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGTCGTGGCTTAGCGGTATAGCGGCTGATTCGTAATCAGCAGGCCGAGGGTTCAAGTC
CCTCCGACGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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