The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1218
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 451886
End posion on genome 451814
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ggcagtttga
tRNA gene sequence 
GCTGATATAGTGTAGAGGCCAATCATGCCGGCCTTTCACGCCGGCGACTCGGGTTCGAAT
CCCGATATCAGCAttt
Downstream region at tRNA end position 
atcggcggca
Secondary structure (Cloverleaf model)
>At1218	Glu	TTC
                   a      Attt atcggcggca
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     T - A
                     A - T          T A
                    T     A G C C C     A
      A G A        A      | | | | |     G
    G       T G T G       T C G G G     C
    G         | | +                 T T
    C       T C A T
      C A A        G     CGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGATATAGTGTAGAGGCCAATCATGCCGGCCTTTCACGCCGGCGACTCGGGTTCGAAT
CCCGATATCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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