The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1219
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 594262
End posion on genome 594179
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aatagggtag
tRNA gene sequence 
GCGAGGGTAGCCAAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTCTTCAGTAGTTCA
TGGGTTCGAATCCCTTCCCTCGCAttt
Downstream region at tRNA end position 
ttctcaatca
Secondary structure (Cloverleaf model)
>At1219	Leu	TAA
                   g      Attt ttctcaatca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        A      |   | | |     G
  A         A C C G       A T G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCTTCAGTAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCAGGCCAAAGGCGCCAGACTTAAGATCTGGTCTTCAGTAGTTCA
TGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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