The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1220
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 621805
End posion on genome 621734
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ctttttgtat
tRNA gene sequence 
GGATTCGTGGTCTAGTGGTATGACGTCGCCTTCACACGGCGAAGGTCAGGAGTTCGAATC
TCCTCGGATCCActa
Downstream region at tRNA end position 
tcgcttttct
Secondary structure (Cloverleaf model)
>At1220	Val	CAC
                   t      Acta tcgcttttct
                     G - C
                     G - C
                     A - T
                     T - A
                     T + G
                     C - G
                     G - C          T A
                    T     T C C T C     A
        G A        G      | | | | |     G
      T     T C T G       A G G A G     C
      G       | | |                 T T
      G     T G A C
        T A        G     AGGTC
                    T - A
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGATTCGTGGTCTAGTGGTATGACGTCGCCTTCACACGGCGAAGGTCAGGAGTTCGAATC
TCCTCGGATCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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