The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1221
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 621895
End posion on genome 621825
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
cgcaaagact
tRNA gene sequence 
GCACTGATGGTCTAGAGGTATGACTTTGGCCTTCCAAGCCAATAGCCCGGGTTCGATTCC
CGGTCGGTGCActt
Downstream region at tRNA end position 
ttcatccttt
Secondary structure (Cloverleaf model)
>At1221	Gly	TCC
                   t      Actt ttcatccttt
                     G - C
                     C - G
                     A - T
                     C - G
                     T + G
                     G - C
                     A - T          T T
                    T     G G C C C     A
        G A        G      | | | | |     G
      A     T C T G       C C G G G     C
      G       | | |                 T T
      G     T G A C
        T A        T     TAGC
                    T - A
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCACTGATGGTCTAGAGGTATGACTTTGGCCTTCCAAGCCAATAGCCCGGGTTCGATTCC
CGGTCGGTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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