The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1222
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 736462
End posion on genome 736389
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
acagaaaacg
tRNA gene sequence 
GGGCCTATAGCTTAGTCAGGAATAGCGACGGACTCTTAATCCGTAGGCCAGGGGTTCAAA
TCCCTTTAGGCCCGctt
Downstream region at tRNA end position 
tgttttttac
Secondary structure (Cloverleaf model)
>At1222	Lys	CTT
                   g      Gctt tgttttttac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     A - T          T A
                    T     T T C C C     A
      T G A        A      | + | | |     A
    C       T T C G       A G G G G     C
    A         | | |                 T T
    G       T A G C
      G A A        G     AGGCC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCTATAGCTTAGTCAGGAATAGCGACGGACTCTTAATCCGTAGGCCAGGGGTTCAAA
TCCCTTTAGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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