The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1224
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 752303
End posion on genome 752220
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
atagacacct
tRNA gene sequence 
GCCGAGGTAGTCTAGTCCGGAAGGGCGGTGGCCTCGAAAGCCACTGGTGGCGACACCTCG
GGAGTTCAAATCTCCCCCTCGGCGttc
Downstream region at tRNA end position 
tttatttttc
Secondary structure (Cloverleaf model)
>At1224	Ser	CGA
                   t      Gttc tttatttttc
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C C C T C     A
      T G A        A      | | | | |     A
    C       T C T G       G G G A G     C
    C       + | + |                 T T
    G       G G G C
      G A A        G     TGGTGGCGACACCTC
                    G - C
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGAGGTAGTCTAGTCCGGAAGGGCGGTGGCCTCGAAAGCCACTGGTGGCGACACCTCG
GGAGTTCAAATCTCCCCCTCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK