The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1225
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 777608
End posion on genome 777534
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position
attggaatca
tRNA gene sequence
GGACATGTAGCCAAGCCAGGATATGGCATCAGCCTCCTAAGCTGAAGATCTAGGGTTCGA
ATCCCTACATGCCCGttt
Downstream region at tRNA end position
acatttttgg
Secondary structure (Cloverleaf model)
>At1225	Arg	CCT
                   a      Gttt acatttttgg
                     G - C
                     G - C
                     A   C
                     C - G
                     A - T
                     T - A
                     G - C          T A
                    T     A T C C C     A
    C C G A        A      | | | | |     G
  A         A C C G       T A G G G     C
  G         | | | |                 T T
  G         T G G C
    A T A          A     AGATC
                    T - A
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACATGTAGCCAAGCCAGGATATGGCATCAGCCTCCTAAGCTGAAGATCTAGGGTTCGA
ATCCCTACATGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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