The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1226
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1011106
End posion on genome 1011033
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cactttctgt
tRNA gene sequence 
GCCTCAGTGGCCTAGCCCGGCATAGCGGCTGATTTGTAATCAGCAGGTCGCGAGTTCAAA
TCTCGCCTGAGGCTttt
Downstream region at tRNA end position 
tgaaatgagg
Secondary structure (Cloverleaf model)
>At1226	Thr	TGT
                   t      Tttt tgaaatgagg
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     A - T
                     G - C          T A
                    T     C G C T C     A
      C G A        G      | | | | |     A
    C       T C C G       G C G A G     C
    C           | |                 T T
    G       T A G C
      G C A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCAGTGGCCTAGCCCGGCATAGCGGCTGATTTGTAATCAGCAGGTCGCGAGTTCAAA
TCTCGCCTGAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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