The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1228
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1015436
End posion on genome 1015364
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
aatgtgtgag
tRNA gene sequence
GGGCGCGTAGCTCAGCTGGAAGAGCGCGGCGTTTGCAACGCCGAGGCCTGGGGTTCAAAT
CCCCACGCGTCCActc
Downstream region at tRNA end position
cgtaaccggc
Secondary structure (Cloverleaf model)
>At1228	Ala	TGC
                   g      Actc cgtaaccggc
                     G - C
                     G - C
                     G + T
                     C - G
                     G - C
                     C - G
                     G - C          T A
                    T     A C C C C     A
      C G A        A      | | | | |     A
    T       C T C G       T G G G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     AGGCC
                    C - G
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCGCGTAGCTCAGCTGGAAGAGCGCGGCGTTTGCAACGCCGAGGCCTGGGGTTCAAAT
CCCCACGCGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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