The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1229
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1063938
End posion on genome 1063867
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tgtgttcgtt
tRNA gene sequence 
GGGCCGGTAGATCAGTGGTAGATCGCGTCCTTGGCATGGACGAGGCCGCGGGTTCAATTT
CCGCCCGGTCCActc
Downstream region at tRNA end position 
ctttttcaga
Secondary structure (Cloverleaf model)
>At1229	Ala	GGC
                   t      Actc ctttttcaga
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T T
                    T     C G C C T     A
        G A        A      | | | | +     A
      T     C T A G       G C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGCC
                    C - G
                    G - C
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGTGGTAGATCGCGTCCTTGGCATGGACGAGGCCGCGGGTTCAATTT
CCGCCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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