The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1232
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1267071
End posion on genome 1267001
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
ttactgagat
tRNA gene sequence 
GCGGTAATGGTCTAATGGCATGACAGGGGCTTCCCAAGCCTCTAATCCGGGTTCGATCCC
CGGTTATCGCAttc
Downstream region at tRNA end position 
gatttttatg
Secondary structure (Cloverleaf model)
>At1232	Gly	CCC
                   t      Attc gatttttatg
                     G - C
                     C - G
                     G - C
                     G + T
                     T - A
                     A - T
                     A - T          C T
                    T     G G C C C     A
        A A        G      | | | | |     G
      T     T C T G       C C G G G     C
      G       | | |                 T T
      G     T G A C
        C A        A     TAAT
                    G - C
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTAATGGTCTAATGGCATGACAGGGGCTTCCCAAGCCTCTAATCCGGGTTCGATCCC
CGGTTATCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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