The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1233
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1270034
End posion on genome 1269960
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aatgaattgc
tRNA gene sequence 
GGGGTCGTAGGGTAGCCTGGACCATCCTATTACGTTCGGGACGTAGTGACCTGAGTTCGA
ATCTCAGCGACCCCAttt
Downstream region at tRNA end position 
ttccattctc
Secondary structure (Cloverleaf model)
>At1233	Pro	CGG
                   c      Attt ttccattctc
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      | | | | |     G
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    A C C A        A     TGAC
                    T + G
                    T - A
                    A - T
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTAGGGTAGCCTGGACCATCCTATTACGTTCGGGACGTAGTGACCTGAGTTCGA
ATCTCAGCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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