The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1234
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1273905
End posion on genome 1273821
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ggagttctct
tRNA gene sequence 
GTAGACGTAGCCAAGCCTGGTATGGCGCAGGTTTGCTAAACCTGTGTCCCCCTGGGACTC
GAGGGTTCAAATCCCTCCGTCTGCGctt
Downstream region at tRNA end position 
aacatacgca
Secondary structure (Cloverleaf model)
>At1234	Ser	GCT
                   t      Gctt aacatacgca
                     G - C
                     T + G
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | | | | |     A
    C       A C C G       G A G G G     C
    T       | | | |                 T T
    G       T G G C
      G T A        G     TGTCCCCCTGGGACTC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GTAGACGTAGCCAAGCCTGGTATGGCGCAGGTTTGCTAAACCTGTGTCCCCCTGGGACTC
GAGGGTTCAAATCCCTCCGTCTGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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