The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1235
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1360226
End posion on genome 1360143
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
agtcaaaatt
tRNA gene sequence 
GCGAGGGTTGCCAAGCCAGGTTAACGGCGCAGGGTTTAGGACCCTGTCTCTAGGAGTTCA
AGGGTTCGAATCCCTTCCCTCGCAttg
Downstream region at tRNA end position 
ctcttttacc
Secondary structure (Cloverleaf model)
>At1235	Leu	TAG
                   t      Attg ctcttttacc
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      | | | | |     G
  A         A C C G       A A G G G     C
  G           | | |                 T T
  G         C G G C
    T T A A        G     TCTCTAGGAGTTC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  T       A
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCAAGCCAGGTTAACGGCGCAGGGTTTAGGACCCTGTCTCTAGGAGTTCA
AGGGTTCGAATCCCTTCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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