The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1236
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1381967
End posion on genome 1381777
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
cgcaatcaat
tRNA gene sequence 
GCCCAAGTAGTGTAGTGGCCTATCATGCAGCCCTGTCACGGCTGCGACTCGGATTCGAAT
TCCGACTTGGGCGttt
Downstream region at tRNA end position 
cgttttttta
Secondary structure (Cloverleaf model)
>At1236	Asp	GTC
                   t      Gttt cgttttttta
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C          T A
                    T     A G C C T     A
      T G A        A      | | | | |     G
    G       T G T G       T C G G A     C
    G         | | +                 T T
    C       T C A T
      C T A        G     CGAC
                    C - G
                    A - T
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A *
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCAAGTAGTGTAGTGGCCTATCATGCAGCCCTGTCAcggctgcgactcggattcgaat
tccgacttgggcgcttcttctttcgttttgattgtgcgggattgacgtgcggtttgttgc
ccaagtagtgtagtggcctatcatgcagccctgtcaCGGCTGCGACTCGGATTCGAATTC
CGACTTGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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