The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1238
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1429753
End posion on genome 1429681
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
acttttgtct
tRNA gene sequence 
GCTGATATAGTGTAGTGGCCAATCATGCCGGCCTCTCACGCCGGCGACTGGGGTTCGAAT
CCCCATATCAGCActg
Downstream region at tRNA end position 
tttatcaata
Secondary structure (Cloverleaf model)
>At1238	Glu	CTC
                   t      Actg tttatcaata
                     G - C
                     C - G
                     T - A
                     G - C
                     A - T
                     T - A
                     A - T          T A
                    T     A C C C C     A
      T G A        A      | | | | |     G
    G       T G T G       T G G G G     C
    G         | | +                 T T
    C       T C A T
      C A A        G     CGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGATATAGTGTAGTGGCCAATCATGCCGGCCTCTCACGCCGGCGACTGGGGTTCGAAT
CCCCATATCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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