The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1240
Genome IDCP000559
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocorpusculum labreanum Z [CP000559]
Start position on genome 1546831
End posion on genome 1546760
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
agatatttcc
tRNA gene sequence 
GGGCTCGTATATCAGGGGTAGATAGCTACGTTCGCAACGTAGATGCCGCGGGTTCAAATC
CCGCCGGGTCCActc
Downstream region at tRNA end position 
ggtttttcca
Secondary structure (Cloverleaf model)
>At1240	Ala	CGC
                   c      Actc ggtttttcca
                     G - C
                     G - C
                     G + T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     A
      G     C T A T       G C G G G     C
      G     | | | |                 T T
      G     G A T A
        T A        G     ATGCC
                    C - G
                    T - A
                    A - T
                    C - G
                    G - C
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTATATCAGGGGTAGATAGCTACGTTCGCAACGTAGATGCCGCGGGTTCAAATC
CCGCCGGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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