The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1247
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 416281
End posion on genome 416351
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tggtaccggt
tRNA gene sequence 
GCGATAGTAGTCTAATGGTAGGACAGGGGCTTCCCAAGCCTCTAGTCCGGGTTCGATCCC
CGGCTATCGCAtgg
Downstream region at tRNA end position 
cgttttctct
Secondary structure (Cloverleaf model)
>At1247	Gly	CCC
                   t      Atgg cgttttctct
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A
                     A - T
                     G - C          C T
                    T     G G C C C     A
        A A        A      | | | | |     G
      T     T C T G       C C G G G     C
      G     + | | |                 T T
      G     G G A C
        T A        A     TAGT
                    G - C
                    G + T
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGATAGTAGTCTAATGGTAGGACAGGGGCTTCCCAAGCCTCTAGTCCGGGTTCGATCCC
CGGCTATCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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