The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1251
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 791211
End posion on genome 791283
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
caggtgtttc
tRNA gene sequence 
GGGCCCGTAGCATAGCTGGTGGTGCACCCGGCTGATAACCGGGAGGTCATGCGTTCGAAT
CGCATCGGGCCCAtcg
Downstream region at tRNA end position 
tttctcatat
Secondary structure (Cloverleaf model)
>At1251	Ile	GAT
                   c      Atcg tttctcatat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C G C     A
      C G A        A      | | | | |     G
    T       T A C G       A T G C G     C
    G       + | | |                 T T
    G       G T G C
      T G          A     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCATAGCTGGTGGTGCACCCGGCTGATAACCGGGAGGTCATGCGTTCGAAT
CGCATCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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