The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1252
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 840590
End posion on genome 840674
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
cacgttttga
tRNA gene sequence 
GCGAGGGTAGCCAAGCCCGGCCAACGGCGCCGGACTTAAGATCCGGTCCCGAAGGGGTCC
GTGGGTTCGAATCCCACCCCTCGCAtgt
Downstream region at tRNA end position 
tgtcatggtt
Secondary structure (Cloverleaf model)
>At1252	Leu	TAA
                   a      Atgt tgtcatggtt
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  C         A C C G       G T G G G     C
  G           | | |                 T T
  G         C G G C
    C C A A        G     TCCCGAAGGGGTCC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTAGCCAAGCCCGGCCAACGGCGCCGGACTTAAGATCCGGTCCCGAAGGGGTCC
GTGGGTTCGAATCCCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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