The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1256
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1232468
End posion on genome 1232552
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
cgacattcgc
tRNA gene sequence 
GCGAGAGTTGCCAAGCCAGGTCAAAGGCGCCAGGTTCAGGGCCTGGTCTCGTAGGAGTTC
GCCGGTTCGAATCCGGCCTCTCGCAtgc
Downstream region at tRNA end position 
gcttttttgg
Secondary structure (Cloverleaf model)
>At1256	Leu	CAG
                   c      Atgc gcttttttgg
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C          T A
                    T     C G G C C     A
    C C G A        T      | | | | |     G
  A         A C C G       G C C G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGTAGGAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGAGTTGCCAAGCCAGGTCAAAGGCGCCAGGTTCAGGGCCTGGTCTCGTAGGAGTTC
GCCGGTTCGAATCCGGCCTCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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