The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1258
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1528671
End posion on genome 1528755
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
agaagaacag
tRNA gene sequence 
GCGAGGGTTGCCAAGCCAGGTCAAAGGCGCCAGGTTGAGGGCCTGGTCTCGTAGGAGTTC
GTGAGTTCGAATCTCACCCCTCGCAttt
Downstream region at tRNA end position 
agttgggcca
Secondary structure (Cloverleaf model)
>At1258	Leu	GAG
                   g      Attt agttgggcca
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C T C     A
    C C G A        T      | | | | |     G
  A         A C C G       G T G A G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGTAGGAGTTC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGGGTTGCCAAGCCAGGTCAAAGGCGCCAGGTTGAGGGCCTGGTCTCGTAGGAGTTC
GTGAGTTCGAATCTCACCCCTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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