The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1259
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1698223
End posion on genome 1698297
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
ggtgcaatgc
tRNA gene sequence 
GCTGCTATAGTGTAGACCGGCCAATCATGCAGGACTCTCACTCCTGCGACTGGGGTTCGA
ATCCCCATAGCAGCAtac
Downstream region at tRNA end position 
tgttctaagg
Secondary structure (Cloverleaf model)
>At1259	Glu	CTC
                   c      Atac tgttctaagg
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     A C C C C     A
    C A G A        A      | | | | |     G
  C         T G T G       T G G G G     C
  G           | | +                 T T
  G         T C A T
    C C A A        G     CGAC
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGCTATAGTGTAGACCGGCCAATCATGCAGGACTCTCACTCCTGCGACTGGGGTTCGA
ATCCCCATAGCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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