The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1260
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1737261
End posion on genome 1737333
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gcatagattc
tRNA gene sequence 
GCTGCTATAGTGTAGGGGCCAATCATGTCGGCCTTTCACGCCGACGACAGGGGTTCGAAT
CCCCTTAGCAGCAtac
Downstream region at tRNA end position 
tgttctgacg
Secondary structure (Cloverleaf model)
>At1260	Glu	TTC
                   c      Atac tgttctgacg
                     G - C
                     C - G
                     T - A
                     G - C
                     C - G
                     T - A
                     A - T          T A
                    T     T C C C C     A
      G G A        A      | | | | |     G
    G       T G T G       A G G G G     C
    G         | | +                 T T
    C       T C A T
      C A A        G     CGAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCTGCTATAGTGTAGGGGCCAATCATGTCGGCCTTTCACGCCGACGACAGGGGTTCGAAT
CCCCTTAGCAGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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