The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1262
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1796583
End posion on genome 1796656
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gtaccaatga
tRNA gene sequence 
GGGGTCGTGGGGTAGCCTGGCCATCCTATGGCGTTCGGGATGCTGTGACCTGAGTTCAAA
TCTCAGCGACCCCAttt
Downstream region at tRNA end position 
tatcattaat
Secondary structure (Cloverleaf model)
>At1262	Pro	CGG
                   a      Attt tatcattaat
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        G      | | | | |     A
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    C C A          A     TGAC
                    T + G
                    G + T
                    G - C
                    C - G
                    G + T
                  T       A
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGGGTAGCCTGGCCATCCTATGGCGTTCGGGATGCTGTGACCTGAGTTCAAA
TCTCAGCGACCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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