The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1266
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 2005657
End posion on genome 2005729
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
gtgagacagc
tRNA gene sequence 
ACCTTCGTGGATCAGCCGGTAGAGCATGTCCTTGGTAAGGACAAGGTCGCAGGTTCAATT
CCCGCCGAAGGCTaaa
Downstream region at tRNA end position 
agactagact
Secondary structure (Cloverleaf model)
>At1266	Thr	GGT
                   c      Taaa agactagact
                     A   C
                     C - G
                     C - G
                     T - A
                     T - A
                     C - G
                     G - C          T T
                    T     C G C C C     A
      C G A        G      | |   | |     A
    C       C T A G       G C A G G     C
    G       | |   |                 T T
    G       G A G C
      T A          A     AGGTC
                    T - A
                    G - C
                    T - A
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
ACCTTCGTGGATCAGCCGGTAGAGCATGTCCTTGGTAAGGACAAGGTCGCAGGTTCAATT
CCCGCCGAAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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