The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1268
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 2242351
End posion on genome 2242421
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
accgtgcatt
tRNA gene sequence 
GCATCGATGGTCTAGTGGTATGACTTTGGCCTTCCAAGCCAATAGCCCGGGTTCAATTCC
CGGTCGATGCAtgg
Downstream region at tRNA end position 
ggctcgtggt
Secondary structure (Cloverleaf model)
>At1268	Gly	TCC
                   t      Atgg ggctcgtggt
                     G - C
                     C - G
                     A - T
                     T - A
                     C - G
                     G - C
                     A - T          T T
                    T     G G C C C     A
        G A        G      | | | | |     A
      T     T C T G       C C G G G     C
      G       | | |                 T T
      G     T G A C
        T A        T     TAGC
                    T - A
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCATCGATGGTCTAGTGGTATGACTTTGGCCTTCCAAGCCAATAGCCCGGGTTCAATTCC
CGGTCGATGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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