The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1269
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 2242424
End posion on genome 2242497
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tcgatgcatg
tRNA gene sequence 
GGGCTCGTGGTCTAGCTGGTTATGACGTCGCCTTCACACGGCGGAGGTCTCGAGTTCGAA
TCTCGACGAGCCCActc
Downstream region at tRNA end position 
gcaattgcgg
Secondary structure (Cloverleaf model)
>At1269	Val	CAC
                   g      Actc gcaattgcgg
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C          T A
                    T     A G C T C     A
      C G A        G      | | | | |     G
    T       T C T G       T C G A G     C
    G         | | |                 T T
    G       T G A C
      T T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGCTGGTTATGACGTCGCCTTCACACGGCGGAGGTCTCGAGTTCGAA
TCTCGACGAGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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