The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1276
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 528505
End posion on genome 528433
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
agagcccaat
tRNA gene sequence 
AGCCCGGTAGTGTAGCGGTCAATCATGTGAGACTCTGGATCTCGCGACAGCAGTTCGAAT
CTGCTCCGGGCTActc
Downstream region at tRNA end position 
gaatcttttt
Secondary structure (Cloverleaf model)
>At1276	Gln	CTG
                   t      Actc gaatcttttt
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     T C G T C     A
      C G A        A      | | | | |     G
    G       T G T G       A G C A G     C
    G         | | +                 T T
    T       T C A T
      C A A        G     CGAC
                    T + G
                    G - C
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTAGTGTAGCGGTCAATCATGTGAGACTCTGGATCTCGCGACAGCAGTTCGAAT
CTGCTCCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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