The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1279
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 959094
End posion on genome 959023
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gcacggacgt
tRNA gene sequence 
GCGCCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACCCGGGTTCGAGTC
CCGGTCGGCGCAtca
Downstream region at tRNA end position 
ggaactccgg
Secondary structure (Cloverleaf model)
>At1279	Gly	GCC
                   t      Atca ggaactccgg
                     G - C
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C
                     A - T          T G
                    T     G G C C C     A
      T G A        A      | | | | |     G
    G       T G T G       C C G G G     C
    G         | | |                 T T
    T       T C A C
      T A          T     AAAC
                    A - T
                    G - C
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGCCGATAGTGTAGTGGTTATCACTAGGCGTTGCCAACGCCTAAACCCGGGTTCGAGTC
CCGGTCGGCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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