The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1281
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1153938
End posion on genome 1153854
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
ctatatgcag
tRNA gene sequence 
GCGGGGGTTGCCGAGCCAGGTCAAAGGCGCTGGATTTAGGGTCCAGTCTCGAAGGAGTTC
AAGGGTTCGAATCCCTTCCCCCGCAtta
Downstream region at tRNA end position 
ccgtctttgt
Secondary structure (Cloverleaf model)
>At1281	Leu	TAG
                   g      Atta ccgtctttgt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T T C C C     A
    C C G A        T      | | | | |     G
  A         G C C G       A A G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCTCGAAGGAGTTC
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCAGGTCAAAGGCGCTGGATTTAGGGTCCAGTCTCGAAGGAGTTC
AAGGGTTCGAATCCCTTCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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