The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1288
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1695747
End posion on genome 1695673
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tccgaagtat
tRNA gene sequence 
GGGCTTGTGGCCTAGCCCGGACATGGCGTCAGCCTCCTAAGCTGAATGCCGGGGGTTCAA
ATCCCCCCAAGCCCGctg
Downstream region at tRNA end position 
tttctctcaa
Secondary structure (Cloverleaf model)
>At1288	Arg	CCT
                   t      Gctg tttctctcaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     T - A
                     G - C          T A
                    T     C C C C C     A
    C C G A        G      | | | | |     A
  C         T C C G       G G G G G     C
  G           | | |                 T T
  G         T G G C
    A C A          G     ATGCC
                    T - A
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTTGTGGCCTAGCCCGGACATGGCGTCAGCCTCCTAAGCTGAATGCCGGGGGTTCAA
ATCCCCCCAAGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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