The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1291
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 2113035
End posion on genome 2112953
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
aggtacaggc
tRNA gene sequence 
GCGAGTGTTACCGAGCGGCCAAAGGTGATCGACTCAAGATCGATTCTCGAAGGAGTTCGC
AGGTTCGAATCCTGCCACTCGCAttt
Downstream region at tRNA end position 
tgctcctgaa
Secondary structure (Cloverleaf model)
>At1291	Leu	CAA
                   c      Attt tgctcctgaa
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C          T A
                    T     C G T C C     A
      C G A        T      | | | | |     G
    G       G C C A       G C A G G     C
    G         | | |                 T T
    C       A G G T
      C A A        G     TCTCGAAGGAGTTC
                    A - T
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGAGTGTTACCGAGCGGCCAAAGGTGATCGACTCAAGATCGATTCTCGAAGGAGTTCGC
AGGTTCGAATCCTGCCACTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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