The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1292
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 51546
End posion on genome 51622
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tatggacgaa
tRNA gene sequence 
GGGCCCGCAGCTCAGCCTGGCAGAGCGCGGCCTTGGCGCGGCCGTGGCCCCGGGTTCAAA
TCCCGGCGGGTCCACCA
Downstream region at tRNA end position 
ccactaattg
Secondary structure (Cloverleaf model)
>At1292	Ala	GGC
                   a      ACCA ccactaattg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     TGGCC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  T       C
                  T       G
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGCTCAGCCTGGCAGAGCGCGGCCTTGGCGCGGCCGTGGCCCCGGGTTCAAA
TCCCGGCGGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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