The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1293
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 51735
End posion on genome 51812
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gctgggagga
tRNA gene sequence 
GGGCCCGCAGCTCAGCCAGGTTAGAGCGCGGGGCTGATAACCCCGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
ccactaattg
Secondary structure (Cloverleaf model)
>At1293	Ile	GAT
                   a      ACCA ccactaattg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
    C C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGCTCAGCCAGGTTAGAGCGCGGGGCTGATAACCCCGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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