The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1297
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 464925
End posion on genome 465001
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctgggacgaa
tRNA gene sequence 
GGGCCCGCAGCTCAGTCTGGCAGAGCGCGGCCCTTGCGAGGCCGTGGCCCCGGGTTCAAA
TCCCGGCGGGTCCACCA
Downstream region at tRNA end position 
acgccatatc
Secondary structure (Cloverleaf model)
>At1297	Ala	TGC
                   a      ACCA acgccatatc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      T G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G C A        G     TGGCC
                    C - G
                    G - C
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGCTCAGTCTGGCAGAGCGCGGCCCTTGCGAGGCCGTGGCCCCGGGTTCAAA
TCCCGGCGGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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