The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1300
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 584970
End posion on genome 585046
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
gcacaggcgc
tRNA gene sequence 
GGGCCCGCAGTTCAGCCCGGCAGAACGCCGGCCTTACGAGCCGGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
ccactaattg
Secondary structure (Cloverleaf model)
>At1300	Val	TAC
                   c      ACCA ccactaattg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    C     G G C C C     A
      C G A        A      | | | | |     A
    C       C T T G       C C G G G     C
    C       | | | |                 T T
    G       G A A C
      G C A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGCAGTTCAGCCCGGCAGAACGCCGGCCTTACGAGCCGGTGGTCCCGGGTTCAAA
TCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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