The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1301
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 589641
End posion on genome 589730
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
ggacgcgccc
tRNA gene sequence 
GCGGGGGCGCCCGAGCCTGGTCAAAGGGGCGGGAATGAGGATCCCGTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Downstream region at tRNA end position 
agcgggaatc
Secondary structure (Cloverleaf model)
>At1301	Leu	GAG
                   c      ACCA agcgggaatc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C C G A        G      | | | | |     A
  T         G C C C       C C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCCGTAGGGCCGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  A       A
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGCGCCCGAGCCTGGTCAAAGGGGCGGGAATGAGGATCCCGTGGCCGTAGGGCCG
TCCCGGGTTCAAATCCCGGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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