The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1303
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 954681
End posion on genome 954755
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
cccgggctcg
tRNA gene sequence 
GGGCCGGCAGCTCAGTCTGGACAGAGCGCGGGCCTTCGGAGCCCCGTGGTCCCGGGTTCA
AATCCCGGCCGGCCCAcac
Downstream region at tRNA end position 
gcgttatcgt
Secondary structure (Cloverleaf model)
>At1303	Arg	TCG
                   g      Acac gcgttatcgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    C     G G C C C     A
    C T G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     GTGGTC
                    C   C
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGCAGCTCAGTCTGGACAGAGCGCGGGCCTTCGGAGCCCCGTGGTCCCGGGTTCA
AATCCCGGCCGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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