The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1304
Genome IDAE009439
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanopyrus kandleri AV19 [AE009439]
Start position on genome 1020437
End posion on genome 1020514
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tgtggggatc
tRNA gene sequence 
GCCGCGGTAGCTCAGCCTGGTTAGAGCGCCGCCTTGGTAAGGCGGTGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTCCA
Downstream region at tRNA end position 
gttcgattcg
Secondary structure (Cloverleaf model)
>At1304	Thr	GGT
                   c      TCCA gttcgattcg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGCCTGGTTAGAGCGCCGCCTTGGTAAGGCGGTGGTCCCGGGTTCAA
ATCCCGGCCGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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